Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs191894 chr6:53185061 C/G 4.99E-5 509 13.7 23.33 22.47 KM Plot
LGG rs1948681 chr9:22543800 A/G 1.45E-8 509 17.67 16.62 24.53 KM Plot
LGG rs1951736 chr14:24422733 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs1957678 chr14:24418726 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs1976936 chr9:37955433 G/A 7.22E-7 507 22.73 20.92 5.03 KM Plot
LGG rs199518524 chr18:72057058 T/TA 2.09E-7 508 22.58 21.67 7.6 KM Plot
LGG rs199722665 chr3:153667876 A/AAC 0 507 22.57 21.87 0.23 KM Plot
LGG rs199884309 chr5:169039295 T/TA 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs200210321 chr19:19393890 A/AG 1.92E-5 507 21.68 26.5 15.05 KM Plot
LGG rs200451423 chr1:204159537 T/TTG 2.26E-5 505 22.58 24.77 7.18 KM Plot
LGG rs200502139 chr6:53108635 TTC/T 3.34E-5 505 22.57 20.23 14.8 KM Plot
LGG rs200601519 chr5:169050690 A/AC 1.66E-8 505 22.12 23.85 6.83 KM Plot
LGG rs200796956 chr10:107901151 AT/A 8.68E-5 501 21.6 28.68 13 KM Plot
LGG rs200839917 chr16:31751269 AGCCCATCCCTTTATTTTG/A 5.24E-7 488 22.47 25.33 7.8 KM Plot
LGG rs201047912 chr5:168966496 TA/T 1.46E-8 509 22.37 23.63 6.83 KM Plot